1.     Chen, X., Chen, N.X., Shen, Y.Q., Li, H.X., Li, L., Lu, B., Zhu, Z.C., Fan, Z., Yan, C.G.* (2020) The subsystem mechanism of default mode network underlying rumination: a reproducible neuroimaging study. Neuroimage, 117185

2.     Li, L., Lu, B., Yan, C.G.* (2020) Stability of dynamic functional architecture differs between brain networks and states. Neuroimage, 216, 116230.

3.     Zhou, H.-X., Chen, X., Shen, Y.-Q., Li, L., Chen, N.-X., Zhu, Z.-C., Castellanos, F.X., Yan, C.-G.* (2020) Rumination and the default mode network: Meta-analysis of brain imaging studies and implications for depression. Neuroimage, 206, 116287.

4.     Shen, Y.-Q., Zhou, H.-X., Chen, X., Castellanos, F.X., Yan, C.-G.* (2020). Meditation effect in changing functional integrations across large-scale brain networks: Preliminary evidence from a meta-analysis of seed-based functional connectivity. Journal of Pacific Rim Psychology, 14, e10.

5.     Long, Y., Cao, H., Yan, C.G., Chen, X., Li, L., Castellanos, F.X., Bai, T., Bo, Q., Chen, G., Chen, N., Chen, W., Cheng, C., Cheng, Y., Cui, X., Duan, J., Fang, Y., Gong, Q., Guo, W., Hou, Z., Hu, L., Kuang, L., Li, F., Li, K., Li, T., Liu, Y., Luo, Q., Meng, H., Peng, D., Qiu, H., Qiu, J., Shen, Y., Shi, Y., Si, T., Wang, C., Wang, F., Wang, K., Wang, L., Wang, X., Wang, Y., Wu, X., Wu, X., Xie, C., Xie, G., Xie, H., Xie, P., Xu, X., Yang, H., Yang, J., Yao, J., Yao, S., Yin, Y., Yuan, Y., Zhang, A., Zhang, H., Zhang, K., Zhang, L., Zhang, Z., Zhou, R., Zhou, Y., Zhu, J., Zou, C., Zang, Y., Zhao, J., Kin-Yuen Chan, C., Pu, W., Liu, Z. (2020). Altered resting-state dynamic functional brain networks in major depressive disorder: Findings from the REST-meta-MDD consortium. NeuroImage: Clinical, 26, 102163.

6.     Yan, C.-G.*, Chen, X., Li, L., Castellanos, F.X., Bai, T.-J., Bo, Q.-J., Cao, J., Chen, G.-M., Chen, N.-X., Chen, W., Cheng, C., Cheng, Y.-Q., Cui, X.-L., Duan, J., Fang, Y.-R., Gong, Q.-Y., Guo, W.-B., Hou, Z.-H., Hu, L., Kuang, L., Li, F., Li, K.-M., Li, T., Liu, Y.-S., Liu, Z.-N., Long, Y.-C., Luo, Q.-H., Meng, H.-Q., Peng, D.-H., Qiu, H.-T., Qiu, J., Shen, Y.-D., Shi, Y.-S., Wang, C.-Y., Wang, F., Wang, K., Wang, L., Wang, X., Wang, Y., Wu, X.-P., Wu, X.-R., Xie, C.-M., Xie, G.-R., Xie, H.-Y., Xie, P., Xu, X.-F., Yang, H., Yang, J., Yao, J.-S., Yao, S.-Q., Yin, Y.-Y., Yuan, Y.-G., Zhang, A.-X., Zhang, H., Zhang, K.-R., Zhang, L., Zhang, Z.-J., Zhou, R.-B., Zhou, Y.-T., Zhu, J.-J., Zou, C.-J., Si, T.-M., Zuo, X.-N., Zhao, J.-P.*, Zang, Y.-F.* (2019) Reduced default mode network functional connectivity in patients with recurrent major depressive disorder. Proceedings of the National Academy of Sciences of the United States of America, 116(18), 9078-9083.

7.     Fan, Z., Chen, X., Qi, Z.X., Li, L., Lu, B., Jiang, C.L., Zhu, R.Q., Yan, C.G.*, Chen, L.*, (2019) Physiological significance of R-fMRI indices: Can functional metrics differentiate structural lesions (brain tumors)? Neuroimage: Clinical, 22: 101741.

8.     An, J., Li, L., Wang, L., Su, Y.A., Wang, Y., Li, K., Zeng, Y., Kong, Q., Yan, C.G.*, Si, T.M.* (2019) Striatal functional connectivity alterations after two-week antidepressant treatment associated to enduring clinical improvement in major depressive disorder. Frontiers in Psychiatry, 10, 884.

9.     Jia, X.Z., Wang, J., Sun, H.Y., Zhang, H., Liao, W., Wang, Z., Yan, C.G., Song, X.W., Zang, Y.F., 2019. RESTplus: an improved toolkit for resting-state functional magnetic resonance imaging data processing. Science Bulletin 64, 953-954.

10.  Chen X, Lu B, Yan CG* (2018) Reproducibility of R-fMRI metrics on the impact of different strategies for multiple comparison correction and sample sizes. Human Brain Mapping. 39: 300-318.

11.  Kong QM, Qiao H, Liu CZ, Zhang P, Li K, Wang L, Li JT, Su YA, Li KQ, Yan CG*, Mitchell, PB, Si TM* (2018) Aberrant intrinsic functional connectivity in thalamo-cortical networks in major depressive disorder. CNS Neuroscience & Therapeutics. 24(11): 1063-1072.

12.  Li Q, Wang L, Li XY, Chen X, Lu B, Cheng L, Yan CG*, Xu Y* (2018) Total salvianolic acid balances brain functional network topology in rat hippocampi overexpressing miR-30e. Frontiers in Neuroscience. 12: 448.

13.  Yan CG*, Yang Z, Colcombe S, Zuo XN, Milham MP (2017) Concordance among indices of intrinsic brain function: insights from inter-individual variation and temporal dynamics. Science Bulletin. 62: 1572-1584.

14.  Yan CG#, Rincon-Cortes M#, Raineki C, Sarro E, Colcombe S, Guilfoyle DN, Yang Z, Gerum S, Biswal BB, Milham MP, Sullivan RM, Castellanos FX (2017) Aberrant development of intrinsic brain activity in a rat model of caregiver maltreatment of offspring. Translational Psychiatry. 7: e100.

15.  Wang L, Kong QM, Li K, Li XN, Zeng YW, Chen C, Qian Y, Feng SJ, Li JT, Su YA, Correll CU, Mitchell PB, Yan CG*, Zhang DR, Si TM* (2017) Altered intrinsic functional brain architecture in female patients with bulimia nervosa. Journal of Psychiatry & Neuroscience. 42: 414-423.

16.  Colibazzi T, Yang Z, Horga G, Yan CG, Corcoran CM, Klahr K, Brucato G, Girgis R, Abi-Dargham A, Milham MP, Peterson BS (2017) Aberrant temporal connectivity in persons at clinical high risk for psychosis. Biological Psychiatry: Cognitive Neuroscience and Neuroimaging. 2: 696-705.

17.  Wei YB, Liao XH, Yan CG, He Y, Xia MR (2017) Identifying Topological Motif Patterns of Human Brain Functional Networks. Human Brain Mapping. 38: 2734-2750.

18.  Zhang YW, Zhao ZL, Qi ZG, Hu Y, Wang YS, Sheng C, Sun Y, Wang XN, Jiang LL, Yan CG, Li KC, Li HJ, Zuo XN (2017) Local-to-remote cortical connectivity in amnestic mild cognitive impairment. Neurobiology of Aging. 56: 138-149.

19.  Zhang JT, Ma SS, Yan CG, Zhang S, Liu L, Wang LJ, Liu B, Yao YW, Yang YH, Fang XY (2017) Altered coupling of default-mode, executive-control and salience networks in Internet gaming disorder. European Psychiatry. 45: 114-120.

20.  Yan CG*, Wang XD, Zuo XN, Zang YF (2016) DPABI: Data processing & analysis for (resting-state) brain imaging. Neuroinformatics. 14: 339-351.

21.  Shang CY, Yan CG, Lin HY, Tseng WY, Castellanos FX, Gau SS (2016) Differential effects of methylphenidate and atomoxetine on intrinsic brain activity in children with attention deficit hyperactivity disorder. Psychological Medicine. 46(15): 3173-3185.

22.  Opitz A, Falchier A, Yan CG, Yeagle EM, Linn GS, Megevand P, Thielscher A, Deborah AR, Milham MP, Mehta AD, Schroeder CE (2016) Spatiotemporal structure of intracranial electric fields induced by transcranial electric stimulation in humans and nonhuman primates. Scientific Reports. 6: 31236.

23.  Yan CG*, Li Q, Gao L (2015) PRN: a preprint service for catalyzing R-fMRI and neuroscience related studies. F1000Research. 3: 313.

24.  Dai ZJ, Yan CG, Li KC, Wang ZQ, Wang JH, Cao M, Lin QX, Shu N, Xia MR, Bi YC, He Y (2015) Identifying and mapping connectivity patterns of brain network hubs in Alzheimer's Disease. Cerebral Cortex. 25: 3723-3742.

25.  Wang J, Yang N, Liao W, Zhang H, Yan CG, Zang YF, Zuo XN (2015) Dorsal anterior cingulate cortex in typically developing children: laterality analysis. Developmental Cognitive Neuroscience. 15: 117-129.

26.  Yang Z, Jutagir DR, Koyama MS, Craddock RC, Yan CG, Shehzad Z, Castellanos FX, Di Martino A, Milham MP (2015) Intrinsic brain indices of verbal working memory capacity in children and adolescents. Developmental Cognitive Neuroscience. 15, 67-82.

27.  Somandepalli K, Kelly C, Reiss PT, Zuo XN, Craddock RC, Yan CG, Petkova E, Castellanos FX, Milham MP, Di Martino A (2015) Short-term test-retest reliability of resting state fMRI metrics in children with and without Attention-Deficit/Hyperactivity Disorder. Developmental Cognitive Neuroscience. 15: 83-93.

28.  Zhang JT, Ma SS, Yip SW, Wang LJ, Chen C, Yan CG, Liu L, Liu B, Deng LY, Liu QX, Fang XY (2015) Decreased functional connectivity between ventral tegmental area and nucleus accumbens in Internet gaming disorder: evidence from resting state functional magnetic resonance imaging. Behavioral and Brain Functions. 11: 37.

29.  Qiu TM#, Yan CG#, Tang WJ, Wu JS, Zhuang DX, Yao CJ, Lu JF, Zhu FP, Mao Y, Zhou LF (2014) Localizing hand motor area using resting-state fMRI: validated with direct cortical stimulation. Acta Neurochir. 156, 2295-2302.

30.  Di Martino A, Yan CG#, Li Q#, Denio E, Castellanos FX, Alaerts K, Anderson JS, Assaf M, Bookheimer SY, Dapretto M, Deen B, Delmonte S, Dinstein I, Ertl-Wagner B, Fair DA, Gallagher L, Kennedy DP, Keown CL, Keysers C, Lainhart JE, Lord C, Luna B, Menon V, Minshew N, Monk CS, Mueller S, Muller RA, Nebel MB, Nigg JT, O’Hearn K, Pelphrey KA, Peltier SJ, Rudie JD, Sunaert S, Thioux M, Tyszka JM, Uddin LQ, Verhoeven JS, Wenderoth N, Wiggins JL, Mostofsky SH, Milham MP (2014) The Autism Brain Imaging Data Exchange: towards large-scale evaluation of the intrinsic brain architecture in Autism. Molecular Psychiatry. 19: 659-667.

31.  Yang Z, Craddock RC, Margulies D, Yan CG, Milham MP (2014) Common intrinsic connectivity states among posteromedial cortex subdivisions: Insights from analysis of temporal dynamics. Neuroimage. 93:124-137.

32.  Yan CG, Cheung B, Kelly C, Colcombe S, Craddock RC, Di Martino A, Li Q, Zuo XN, Castellanos FX, Milham MP (2013) A comprehensive assessment of regional variation in the impact of head micromovements on functional connectomics. Neuroimage. 76:183-201.

33.  Yan CG, Craddock RC, Zuo XN, Zang YF, Milham MP (2013) Standardizing the intrinsic brain: towards robust measurement of inter-individual variation in 1000 functional connectomes. Neuroimage. 80: 246-262.

34.  Yan CG*, Craddock RC, He Y, Milham MP* (2013) Addressing head motion dependencies for small-world topologies in functional connectomics. Frontiers in Human Neuroscience. 7: 910.

35.  Craddock RC, Jbabdi S#, Yan CG#, Vogelstein J, Castellanos FX, Di Martino A, Kelly C, Heberlein K, Colcombe S, Milham MP (2013) Imaging human connectomes at the macroscale. Nature Methods. 10: 524-539. 

36.  Li YY, Booth JR, Peng DL, Zang YF, Li JH, Yan CG, Ding GS (2013) Altered intra- and inter-regional synchronization of superior temporal cortex in deaf people. Cerebral Cortex. 23: 1988-1996.

37.  Dai ZJ#, Yan CG#, Wang ZQ, Wang JH, Xia MR, Li KC, He Y (2012) Discriminative analysis of early Alzheimer’s disease using multi-modal imaging and multi-level characterization with multi-classifier (M3). Neuroimage. 59: 2187-2195.

38.  Zang ZX, Yan CG, Dong ZY, Huang J, Zang YF (2012) Granger causality analysis implementation on MATLAB: a graphic user interface toolkit for fMRI data processing. Journal of Neuroscience Methods. 203: 418-426.

39.  Dong ZY, Liu DQ, Wang J, Qing Z, Zang ZX, Yan CG, Zang YF (2012) Low-frequency fluctuation in continuous real-time feedback of finger force: a new paradigm for sustained attention. Neuroscience Bulletin. 28: 456-467.

40.  Liang X, Wang JH, Yan CG, Shu N, Xu K, Gong GL, He Y (2012) Effects of different correlation metrics and preprocessing factors on small-world brain functional networks: a resting-state functional MRI study. PLoS ONE. 7(3): e32766.

41.  Li SF, Zou QH, Li J, Li J, Wang DY, Yan CG, Dong Q, Zang YF (2012) 5-HTTLPR polymorphism impacts task-evoked and resting-state activities of the amygdala in Han Chinese. PLoS ONE. 7: e36513.

42.  Wang DY, Han XJ, Li SF, Liu DQ, Yan CG, Zuo XN, Zhu CZ, He Y, Kiviniemi V, Zang YF (2012) Effects of apolipoprotein e genotype on the off-line memory consolidation. PLoS ONE. 7: e51617.

43.  Xi Q, Zhao XH, Wang PJ, Guo QH, Yan CG, He Y (2012) Functional MRI study of mild Alzheimer's disease using amplitude of low frequency fluctuation analysis. Chinese medical journal (English). 125(5):858-62.

44.  Nooner KB, Colcombe SJ, Tobe RH, Mennes M, Benedict MM, Moreno AL, Panek LJ, Brown S, Zavitz ST, Li Q, Sikka S, Gutman D, Bangaru S, Schlachter RT, Kamiel SM, Anwar AR, Hinz CM, Kaplan MS, Rachlin AB, Adelsberg S, Cheung B, Khanuja R, Yan CG, Craddock CC, Calhoun V, Courtney W, King M, Wood D, Cox CL, Kelly AM, Di Martino A, Petkova E, Reiss PT, Duan N, Thomsen D, Biswal B, Coffey B, Hoptman MJ, Javitt DC, Pomara N, Sidtis JJ, Koplewicz HS, Castellanos FX, Leventhal BL, Milham MP (2012). The NKI-Rockland Sample: A model for accelerating the pace of discovery science in psychiatry. Frontiers in Neuroscience. 6: 152.

45.  Yan CG, Gong GL, Wang JH, Wang DY, Liu DQ, Zhu CZ, Chen ZJ, Evans A, Zang YF, He Y (2011) Sex- and brain size-related small-world structural cortical networks in young adults: a DTI tractography study. Cerebral Cortex. 21: 449-458.

46.  Yan CG and He Y. (2011) Driving and driven architectures of directed small-world human brain functional networks. PLoS ONE. 6(8): e23460.

47.  Song XW, Dong ZY, Long XY, Li SF, Zuo XN, Zhu CZ, He Y, Yan CG, Zang YF (2011) REST: A toolkit for resting-state functional magnetic resonance imaging data processing. PLoS ONE. 6: e25031.

48.  Wang ZQ#, Yan CG#, Zhao C, Qi ZG, Zhou WD, Lu J, He Y, Li KC (2011) Spatial patterns of intrinsic brain activity in mild cognitive impairment and Alzheimer’s disease: A resting-state functional MRI study. Human Brain Mapping. 32: 1720-1740. (From the cover)

49.  Kang J, Wang L, Yan CG, Wang JH, Liang X, He Y (2011) Characterizing dynamic functional connectivity in the resting brain using variable parameter regression and Kalman filtering approaches. Neuroimage. 56: 1222-1234.

50.  Tian LX, Wang JH, Yan CG, He Y (2011) Hemisphere- and gender-related differences in small-world brain networks: a resting-state functional MRI Study. Neuroimage. 54: 191-202.

51.  Wu JT, Wu HZ, Yan CG, Chen WX, Zhang HY, He Y, Yang HS. (2011) Aging-related changes in the default mode network and its anti-correlated networks: A resting-state fMRI study. Neuroscience Letters. 504: 62-67.

52.  Zhang TJ, Wang JH, Yang YC, Wu QZ, Li B, Chen L, Yue Q, Tang HH, Yan CG, Lui S, Huang XQ, Chan RCK, Zang YF, He Y, Gong QY (2011) Abnormal small-world architecture of top-down control networks in obsessive-compulsive disorder. Journal of Psychiatry and Neuroscience. 36: 23-31.

53.  Yan CG* and Zang YF* (2010) DPARSF: a MATLAB toolbox for "pipeline" data analysis of resting-state fMRI. Frontiers in Systems Neuroscience. 4(13).

54.  Liu DQ, Yan CG, Ren JJ, Yao L, Kiviniemi VJ and Zang YF (2010) Using coherence to measure regional homogeneity of resting-state fMRI signal. Frontiers in Systems Neuroscience. 4(24).

55.  Yan CG, Liu DQ, He Y, Zou QH, Zhu CZ, Zuo XN, Long XY, Zang YF (2009) Spontaneous brain activity in the default mode network is sensitive to different resting-state conditions with limited cognitive load. PLoS ONE. 4(5): e5743.

56.  He Y, Wang JH, Wang L, Chen ZJ, Yan CG, Yang H, Tang HH, Zhu CZ, Gong QY, Zang YF, Evans AC (2009) Uncovering intrinsic modular organization of spontaneous brain activity in humans. PLoS ONE. 4(4): e5226.

57.  Zou QH, Long XY, Zuo XN, Yan CG, Zhu CZ, Yang YH, Liu DQ, He Y, Zang YF (2009) Functional connectivity between the thalamus and visual cortex under eyes closed and eyes open conditions: A resting-state fMRI study. Human Brain Mapping. 30: 3066-3078.

58.  Zhu CZ, Zang YF, Cao QJ, Yan CG, He Y, Jiang TZ, Sui MQ, Wang YF (2008) Fisher discriminative analysis of resting-state brain function for attention-deficit/hyperactivity disorder. Neuroimage. 40:110-20.

59.  鲁彬,陈骁,李乐,沈杨千,陈宁轩,梅婷,周会霞,刘靖,严超赣* (2018) 孤独症脑自发活动动态性及其整合的异常机制. 科学通报. 63(15): 1452-1463

60.  严超赣* (2018) 大数据时代的静息态功能磁共振成像——走向精神疾病诊疗应用. 中华精神科杂志. 51(4): 224-227.


(*Corresponding author  #Equal contribution)